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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9043577_9054319_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9043577 - 9054319
Intron Length:
10743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCACCGGCCACC
Flanking Amino Acid:
PVAGRAVLVTGCDSGFGQAT
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
79.6
0.67
0.9
73.4
37
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
32.8
-1.3
2.7
44.45
43.5

Associated Gene:

Gene:
HSD11B2
Ensembl Gene ID:
ENSAPLG00000022410
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044603
9041863 - 9056019
14157