Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9063585_9063834_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9063585 - 9063834

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCAGCA

5'SS Class:

major

3'SS Sequence:

GTCCTCCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAG

U12 Branch Point Sequence:

TGGCTGCCAGCC

Flanking Amino Acid:

SRAKEVPASKKATDGKKVVV

Intron Amino Acid Position:

764

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.2

59.8

39.5

Major BPS

40.5

-0.6

1.6

47.5

Major PPT

76.5

0.6

0.8

69.7

31.1

Minor 5ss

35.2

-1.7

3.5

48.6

Minor BPS

32.9

-1.3

2.2

41.3

38.5

Associated Gene:

Gene:

FHOD1

Ensembl Gene ID:

ENSAPLG00000007626

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047991

9060933 - 9070975

10043

ENSAPLT00000007955

9060610 - 9069967

9358