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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9066153_9066465_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9066153 - 9066465
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCTTTCTATCT
Flanking Amino Acid:
PPGPGERSVYKLHQPVPVWR
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.9
41.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
41.4
-1
2.9
52.4
38.7
Minor BPS
47.9
-0
1.9
67.24
44.2

Associated Gene:

Gene:
FHOD1
Ensembl Gene ID:
ENSAPLG00000007626
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007955
9060610 - 9069967
9358