Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9066577_9066658_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9066577 - 9066658

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

CCTCTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTCCAT

U12 Branch Point Sequence:

GTCTCCATCAGT

Flanking Amino Acid:

EDSPEPSIPAEPCPKSTYNS

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

75.5

40.6

Major BPS

64.7

0.37

1.3

74.7

Major PPT

84.1

0.77

0.7

76.3

32.3

Minor 5ss

40.6

-1

2.8

48.1

41.6

Minor BPS

47.1

-0.1

2.3

69.34

47.1

Associated Gene:

Gene:

FHOD1

Ensembl Gene ID:

ENSAPLG00000007626

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047991

9060933 - 9070975

10043

ENSAPLT00000007955

9060610 - 9069967

9358