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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9107647_9110926_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9107647 - 9110926
Intron Length:
3280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTGTCTTCAAGT
Flanking Amino Acid:
PGASPPKGTAGFLHLVQIPW
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
81.7
0.71
0.8
76.6
32
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
61.1
0.43
1.9
79.76
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007883
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028638
9087149 - 9111036
23888