Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9123367_9125704_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9123367 - 9125704

Intron Length:

2338

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAATGAT

U12 Branch Point Sequence:

AGACAATGATCT

Flanking Amino Acid:

CHRDWLSFRMKLEHLLQGCQ

Intron Amino Acid Position:

1019

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

68.8

42.2

Major BPS

64.5

0.36

1.1

55.4

40.3

Major PPT

85.4

0.8

0.6

81.4

23.6

Minor 5ss

32.2

-2

3.1

37.3

42.5

Minor BPS

39.6

-0.7

1.9

53.74

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044960

9087149 - 9163490

76342

ENSAPLT00000008215

9081077 - 9163097

82021