Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9141304_9141802_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9141304 - 9141802

Intron Length:

499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

ATTTCGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

TCATGCGCAATC

Flanking Amino Acid:

QFREFDLVASEYCRRGQEAL

Intron Amino Acid Position:

1189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.3

76.2

39.9

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

81.7

0.71

0.9

77.9

35.9

Minor 5ss

39.6

-1.2

3.4

53.7

43.8

Minor BPS

42.4

-0.6

2.4

54.86

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008215

9081077 - 9163097

82021

ENSAPLT00000044960

9087149 - 9163490

76342