Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9141995_9154182_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9141995 - 9154182

Intron Length:

12188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGCGA

5'SS Class:

strong_major

3'SS Sequence:

TGGCTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

TGGCTCTTGCCT

Flanking Amino Acid:

TVRLYEFFDKAYEWALEGMR

Intron Amino Acid Position:

1253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.7

41.7

Major BPS

69.1

0.47

60.7

37.6

Major PPT

73.4

0.53

0.9

66.4

35.7

Minor 5ss

24.7

-2.9

29.8

43.1

Minor BPS

42.9

-0.4

3.4

68.71

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044960

9087149 - 9163490

76342

ENSAPLT00000008215

9081077 - 9163097

82021