Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9161686_9162947_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

9161686 - 9162947

Intron Length:

1262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTAGC

5'SS Class:

major

3'SS Sequence:

TGCTGTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

GCCAGTCTAACC

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

70.9

39.2

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

74.3

0.55

64.8

45.7

Minor 5ss

38.7

-1.3

2.8

51.8

39.1

Minor BPS

42.7

-0.5

47.91

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007883

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044960

9087149 - 9163490

76342

ENSAPLT00000008215

9081077 - 9163097

82021