Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9169987_9171426_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9169987 - 9171426

Intron Length:

1440

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CATTGTATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTAGAAATAACA

Flanking Amino Acid:

EHEFSKDPEEVYPYAAVDFS

Intron Amino Acid Position:

450

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

82.5

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

73.7

0.53

0.9

70.6

39.5

Minor 5ss

36.7

-1.5

3.5

55.8

48.4

Minor BPS

46.3

-0.2

2.1

63.89

41.5

Associated Gene:

Gene:

KCTD19

Ensembl Gene ID:

ENSAPLG00000008025

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008319

9164987 - 9184762

19776

ENSAPLT00000002808

9164987 - 9184103

19117