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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9181325_9183013_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9181325 - 9183013
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TGTATTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTATTTTAACA
Flanking Amino Acid:
LIFQLTPLVQILDNSKEEKH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
77.7
0.62
1
73.4
40.7
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
KCTD19
Ensembl Gene ID:
ENSAPLG00000008025
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008319
9164987 - 9184762
19776
ENSAPLT00000002808
9164987 - 9184103
19117