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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9183311_9183799_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
9183311 - 9183799
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATACAAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTTTTGAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.1
54.8
44
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
84.3
0.77
0.9
86.8
24.4
Minor 5ss
43.7
-0.7
2.7
47.8
48
Minor BPS
56.6
0.06
1.5
64.42
37.4

Associated Gene:

Gene:
KCTD19
Ensembl Gene ID:
ENSAPLG00000008025
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002808
9164987 - 9184103
19117