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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9184852_9186071_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9184852 - 9186071
Intron Length:
1220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
CCTTACTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
CTCACCTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
83.5
0.75
0.8
80.4
31.3
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
58.6
0.35
1.7
71.97
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020459
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020923
9184783 - 9195169
10387