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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9186830_9187921_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9186830 - 9187921
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TACTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
SVSKDVSAKTDLSSCSQLRS
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
68
38
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85
0.79
0.8
76.9
36.9
Minor 5ss
43.9
-0.7
3
58.5
41.3
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020459
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020923
9184783 - 9195169
10387
ENSAPLT00000047843
9185484 - 9195169
9686