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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9188381_9188746_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9188381 - 9188746
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTACTTTATCT
Flanking Amino Acid:
KHKNPLNIKSGFRDATSLSA
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.5
0.69
0.8
74.3
34.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
65.7
0.57
1.6
81.52
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020459
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047843
9185484 - 9195169
9686
ENSAPLT00000035051
9184761 - 9195169
10409
ENSAPLT00000020923
9184783 - 9195169
10387