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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9188962_9190424_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9188962 - 9190424
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
TTTTTCTCATTA
Flanking Amino Acid:
ICCFKDSHKESSSSELSNDT
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
81.9
0.72
0.8
83.2
26.9
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
59.7
0.3
1.8
75.01
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020459
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047843
9185484 - 9195169
9686
ENSAPLT00000035051
9184761 - 9195169
10409
ENSAPLT00000020923
9184783 - 9195169
10387