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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9224980_9226085_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9224980 - 9226085
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GCCACTCTAACA
Flanking Amino Acid:
FQQPAHGVRFWSAKSKHCGT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82.3
0.73
0.9
80.2
31.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
49.4
-0
1.7
57.25
42.1

Associated Gene:

Gene:
ZDHHC1
Ensembl Gene ID:
ENSAPLG00000009433
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009849
9209636 - 9228113
18478