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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9236792_9236863_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9236792 - 9236863
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
CTGTACCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
CCCTCTGTACCC
Flanking Amino Acid:
FQMRAGGVCQDVDECQLFQP
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
73.7
0.53
0.9
66.4
35.4
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
44.5
-0.4
2.2
52.59
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026947
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017932
9234842 - 9237870
3029