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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9244716_9244861_F

Intron Information:

Intron Rank:
129987
Intron Class:
major
Intron Phase:
Intron Coordinates:
9244716 - 9244861
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
TGTGCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACGCTCACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
42.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.8
0.51
0.9
65.8
35.9
Minor 5ss
35
-1.7
3.5
47.2
48.2
Minor BPS
43.1
-0.6
2.7
60.76
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019955
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018061
9240871 - 9244904
4034