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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9252817_9253170_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9252817 - 9253170
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
GTCCCTTTAACC
Flanking Amino Acid:
VQKEITDLSETLATAVIPQW
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
78.3
0.64
0.9
71.9
38
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
71.2
0.65
1.2
72.5
38.5

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715