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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9253285_9253816_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9253285 - 9253816
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
CTCTCCCTACAT
Flanking Amino Acid:
VAVTGAEARKALRKVDSLKK
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
68.5
0.42
1
62.6
44.1
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
48.5
-0
2.1
69.58
46.9

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715