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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9253926_9254248_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9253926 - 9254248
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GTTCTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTCTTTCCAAAG
Flanking Amino Acid:
SITSIEFCGGTHLQNSGHAG
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
69.8
0.45
1
70.8
33.9
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
44.5
-0.5
1.9
52.89
42

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715