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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9256985_9257676_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9256985 - 9257676
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
GTCTTGGTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCCTATTTTACT
Flanking Amino Acid:
SYTSDPSGTYDFGSLVATVK
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.9
35.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
65.3
0.34
1.1
60.1
45
Minor 5ss
39.4
-1.2
2.9
49.3
46.7
Minor BPS
54.8
0.23
1.9
72.49
44.5

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715