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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9257822_9258015_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9257822 - 9258015
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTAAACA
Flanking Amino Acid:
GFEEERKNAQLKSQGKGAGG
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.6
0.58
1
72.4
37.7
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
76.8
0.84
1.5
86.93
31.8

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715