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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9258141_9258485_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9258141 - 9258485
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACGGAA
U12 Branch Point Sequence:
TGTTCCCTGAAG
Flanking Amino Acid:
QSLGDSKTIPGDTAWLLYDT
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
44.9
-0.3
1.2
38.7
32.3
Major PPT
72
0.5
1
72.8
32.5
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
55.1
0.01
1.9
65.87
41.4

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715