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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9258637_9258726_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9258637 - 9258726
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CAGTGCTGAATC
Flanking Amino Acid:
TLVDVVVQSLGDAFPELKKD
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
76.7
0.6
1
69.6
41.6
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
48.5
-0.1
1.9
56
42.7

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715