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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9258836_9259306_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9258836 - 9259306
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAC
U12 Branch Point Sequence:
GATGTTTGCACT
Flanking Amino Acid:
DGGRPDNTGRGYVLRRILRR
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
65.1
0.38
1.4
77.4
37.4
Major PPT
68.9
0.43
0.9
61
40.1
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
44.9
-0.3
1.9
61.91
42.2

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715