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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9260331_9260930_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9260331 - 9260930
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGGCTGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
IWNLVFIQFNREADGTLKPL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
58.8
0.2
1.2
54
45.8
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715