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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9261123_9261837_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9261123 - 9261837
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAG
U12 Branch Point Sequence:
TGTTGGTCAGCA
Flanking Amino Acid:
LECKQIWLNLGLPEGRILPG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
48.3
-0.1
1.7
57.1
49.4
Major PPT
87.8
0.85
0.8
80.5
37
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
41.3
-0.6
2.6
60.35
45.4

Associated Gene:

Gene:
AARS1
Ensembl Gene ID:
ENSAPLG00000008519
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008909
9248363 - 9264077
15715