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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9267716_9270188_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9267716 - 9270188
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TTTGCCCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTGCCCCAGCA
Flanking Amino Acid:
QHPSIRLVQLDTVDLPSIRR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
72.7
0.51
0.9
67.8
33.6
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
47.4
-0.2
2.2
68.63
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027474
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038448
9267330 - 9271507
4178