Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9270307_9270601_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9270307 - 9270601

Intron Length:

295

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTCCGTGGA

5'SS Class:

weak_major

3'SS Sequence:

ACTTTCAGGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAG

U12 Branch Point Sequence:

TGGTCTGCAGCC

Flanking Amino Acid:

NAGIGSHATLQPETLKRVCI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.7

0.02

1.4

48.5

42.5

Major BPS

63.7

0.34

1.6

39.9

Major PPT

62.7

0.29

1.1

41.2

Minor 5ss

28.6

-2.5

3.2

36.8

41.5

Minor BPS

42.4

-0.6

2.3

55.03

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031636

9267330 - 9271507

4178