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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9273378_9273766_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9273378 - 9273766
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
TGTGCCCACATT
Flanking Amino Acid:
CRDPKGQRAQELQNLASKHP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
42.5
-0.5
2.3
64.84
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008353
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008674
9271995 - 9273913
1919