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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9276939_9279996_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9276939 - 9279996
Intron Length:
3058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
GTTCTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCCTCCAAGACG
Flanking Amino Acid:
AGTCWPGRCCGTHIHLKLSS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.5
38.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84
0.77
0.8
77.1
37.1
Minor 5ss
41
-1
3.1
50.4
46
Minor BPS
44.5
-0.5
2
46.84
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008315
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023719
9276502 - 9285593
9092