Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9287754_9287942_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9287754 - 9287942

Intron Length:

189

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGGCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCACCAT

U12 Branch Point Sequence:

AACCCCTCACCA

Flanking Amino Acid:

GLGAEGKKQQSKDSEIKKAG

Intron Amino Acid Position:

1195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

73.2

34.8

Major BPS

0.08

1.4

42.7

Major PPT

90.4

0.91

0.6

85.3

Minor 5ss

30.5

-2.2

3.8

47.1

48.5

Minor BPS

-0.1

1.8

56.98

41.9

Associated Gene:

Gene:

CARMIL2

Ensembl Gene ID:

ENSAPLG00000007850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033131

9286389 - 9303330

16942

ENSAPLT00000008209

9286440 - 9303330

16891