Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9290523_9291511_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9290523 - 9291511

Intron Length:

989

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGGCCA

5'SS Class:

major

3'SS Sequence:

CGCCCTTCGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTGCAT

U12 Branch Point Sequence:

CCCCCGGCCATC

Flanking Amino Acid:

RSIRPTTTVRSPSELELPAS

Intron Amino Acid Position:

920

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

39.6

Major BPS

50.1

1.4

43.2

Major PPT

64.3

0.32

38.7

Minor 5ss

32.7

-2

3.3

40.2

39.6

Minor BPS

27.9

-1.7

2.4

30.52

36.7

Associated Gene:

Gene:

CARMIL2

Ensembl Gene ID:

ENSAPLG00000007850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033131

9286389 - 9303330

16942

ENSAPLT00000008209

9286440 - 9303330

16891