Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9312698_9314735_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9312698 - 9314735

Intron Length:

2038

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

ATACTTCTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

GGAGATTTAACT

Flanking Amino Acid:

RSKKEDSSDSEENAEPDLDD

Intron Amino Acid Position:

619

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

76.9

31.6

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

76.7

0.6

0.8

74.5

35.5

Minor 5ss

33.9

-1.8

2.9

40.8

39.5

Minor BPS

54.6

0.22

1.6

67.48

42.8

Associated Gene:

Gene:

CTCF

Ensembl Gene ID:

ENSAPLG00000007458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041542

9311071 - 9340019

28949

ENSAPLT00000029594

9311071 - 9340019

28949

ENSAPLT00000007769

9311071 - 9328862

17792