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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9315764_9316194_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9315764 - 9316194
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GCTGTCTTGATT
Flanking Amino Acid:
CDQCDYACRQERHMVMHKRT
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.7
0.62
1
77.7
36.7
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
60.3
0.4
1.4
70.56
41.2

Associated Gene:

Gene:
CTCF
Ensembl Gene ID:
ENSAPLG00000007458
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041542
9311071 - 9340019
28949
ENSAPLT00000029594
9311071 - 9340019
28949
ENSAPLT00000007769
9311071 - 9328862
17792