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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9322944_9328856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9322944 - 9328856
Intron Length:
5913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
MQQEGEMEGEAV
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CTCF
Ensembl Gene ID:
ENSAPLG00000007458
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007769
9311071 - 9328862
17792