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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9322944_9337812_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9322944 - 9337812
Intron Length:
14869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
39.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
36.8
-1.5
3.1
49.3
41.1
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CTCF
Ensembl Gene ID:
ENSAPLG00000007458
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029594
9311071 - 9340019
28949