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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9322944_9339869_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9322944 - 9339869
Intron Length:
16926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
MSLKHQQQEGEMEGEAV
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CTCF
Ensembl Gene ID:
ENSAPLG00000007458
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041542
9311071 - 9340019
28949