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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9357314_9357556_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9357314 - 9357556
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
EAAKQSLMLCDGTERTI*
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.7
0.49
1
66.3
44.6
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036370
9355896 - 9371013
15118
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000007503
9355896 - 9367320
11425