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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9358411_9358755_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9358411 - 9358755
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGGTGCTCACCC
Flanking Amino Acid:
DTYVMELAEEVLLAQNLNSD
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
43
-0.5
2.2
50.79
46

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118
ENSAPLT00000035445
9355896 - 9367320
11425
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520