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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9359371_9359521_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9359371 - 9359521
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CGATCCTAAAGT
Flanking Amino Acid:
HLHNCNRLLLKLGTFGPLRC
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
79.3
0.66
0.9
73
37.4
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
52.7
0.16
2
69.24
47.2

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035445
9355896 - 9367320
11425
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118