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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9359697_9360050_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9359697 - 9360050
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCAAC
5'SS Class:
major
3'SS Sequence:
CCCTGGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCTGCACTGACC
Flanking Amino Acid:
GSEEDALQDERRASRARRVS
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.4
38.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
71.5
0.48
0.9
68.2
37.5
Minor 5ss
32.8
-2
3.1
41.6
45.4
Minor BPS
47.8
-0.1
2
63.74
42

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118
ENSAPLT00000035445
9355896 - 9367320
11425
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520