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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9360191_9360358_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9360191 - 9360358
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACCCAT
U12 Branch Point Sequence:
CTTTCCTCCACA
Flanking Amino Acid:
ELKHLEEILLHKQGVFLSRA
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.2
43.8
Major BPS
48.7
-0
1.4
58.4
40.3
Major PPT
81.7
0.71
0.7
76.2
25.9
Minor 5ss
26.4
-2.7
2.9
27.5
37.7
Minor BPS
60.8
0.33
2
75.44
42.2

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118
ENSAPLT00000035445
9355896 - 9367320
11425
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520