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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9363824_9364109_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9363824 - 9364109
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TGCGTCTTATCC
Flanking Amino Acid:
IRESKRNSRLGFLYDLDKQV
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
81.6
0.71
0.7
73.1
31.8
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
53.3
0.08
1.7
62.08
43.7

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118
ENSAPLT00000035445
9355896 - 9367320
11425