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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9364189_9364549_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9364189 - 9364549
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTGGTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
TGGTTCCAGACT
Flanking Amino Acid:
EVYEALKKGLTAYLEVHQLE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
55.9
0.15
1.2
49
38
Major PPT
67.1
0.38
1
57.5
43.2
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
47.3
-0.1
2
67.94
43.1

Associated Gene:

Gene:
RIPOR1
Ensembl Gene ID:
ENSAPLG00000007203
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035445
9355896 - 9367320
11425
ENSAPLT00000027926
9355896 - 9367320
11425
ENSAPLT00000020851
9355896 - 9374415
18520
ENSAPLT00000007503
9355896 - 9367320
11425
ENSAPLT00000036370
9355896 - 9371013
15118