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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_94103_94526_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94103 - 94526
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGAATGAATA
Flanking Amino Acid:
QVLDQAARARLSNLALVKPD
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.9
0.83
0.8
81.8
34.6
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
46.1
-0.3
1.9
59.98
39.5

Associated Gene:

Gene:
PDCD5
Ensembl Gene ID:
ENSAPLG00000026487
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037242
93264 - 96327
3064