Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9417660_9420297_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9417660 - 9420297

Intron Length:

2638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGGTCA

5'SS Class:

strong_major

3'SS Sequence:

GTGGTGCCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAC

U12 Branch Point Sequence:

TCTAGCTGACCC

Flanking Amino Acid:

PTNSTPPVVLVPGCLGNQLE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

69.7

37.4

Major BPS

57.5

0.19

1.1

48.8

38.1

Major PPT

66.1

0.36

54.9

45.8

Minor 5ss

37.5

-1.4

3.2

48.7

Minor BPS

45.6

-0.3

2.1

59.67

45.2

Associated Gene:

Gene:

LCAT

Ensembl Gene ID:

ENSAPLG00000006651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006911

9417509 - 9423702

6194