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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9429333_9438080_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9429333 - 9438080
Intron Length:
8748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CCCTCCCACACA
Flanking Amino Acid:
YMQKEGCVGEVVVQLTDDLL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78.1
36.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
67
0.38
0.8
60.6
28.3
Minor 5ss
44
-0.7
2.9
60.8
43.8
Minor BPS
42
-0.6
2.3
50.88
46.8

Associated Gene:

Gene:
KIAA0895L
Ensembl Gene ID:
ENSAPLG00000006640
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006886
9424387 - 9440406
16020